PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do016141.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GATA
Protein Properties Length: 333aa    MW: 36111.4 Da    PI: 9.8657
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do016141.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.81.3e-17175208134
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                 Cs C+ttkTplWR+gp g+k+LCnaCG+++rk +
  Do016141.1 175 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 208
                 *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577163.66E-13166209No hitNo description
SMARTSM004012.9E-19169221IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.268173205IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.1E-14173208IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.06E-15174206No hitNo description
PfamPF003202.4E-15175208IPR000679Zinc finger, GATA-type
PROSITE patternPS003440175200IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MSTIYMSQLS TLPLMEGEQD QGLFPAFHVT KDPPILFPFM INNPVDQLQG QSSYGDQHLR  60
QQVLAESTQQ FTDRMMMSGS DVFPRPLPFR PTIQSIDGDM IQRSAYDPYD IESKRADGST  120
SAWAVAPPTK MKIMRKSTSE YPEGGAARKP RRRSQAHQDE SQQLQQQAMG VVRVCSDCNT  180
TKTPLWRSGP CGPKSLCNAC GIRQRKARRA MAAAAAAAAS NGGAPQVASV AAQAKPAKKE  240
KRAYIDRSLP FKKRCKMVAV EHAVPAAKAT PAVAAPTKDQ DHVSSDKVAA TAMSLQSKVA  300
TPPPAMSFHA FPADEITDAA MLLMTLSCGL VRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951451.10.0PREDICTED: putative GATA transcription factor 22
TrEMBLK3YXR21e-176K3YXR2_SETIT; Uncharacterized protein
STRINGSi019058m1e-176(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.19e-21cytokinin-responsive gata factor 1